By C. Eschenbach, M. Gruninger
Considering that its commence ten years in the past, the overseas convention in Formal Ontology on details structures (FOIS) has explored the a number of views at the concept of ontology that experience arisen from such varied examine groups as philosophy, common sense, laptop technology, cognitive technological know-how, linguistics, and numerous medical domain names. As ontologies were utilized in new and fascinating domain names equivalent to the realm extensive internet, bioinformatics and geographical details platforms, it has develop into glaring that there's a desire for ontologies which were built with good theoretical foundations according to philosophical, linguistic and logical research. equally, there's additionally a necessity for theoretical examine that's pushed via the problems which have been raised by means of contemporary paintings within the extra utilized domain names. FOIS is meant to be a discussion board during which to discover this interaction among the theoretical insights of formal ontology and their software to info structures and rising semantic applied sciences. subject matters rising from this quantity provide a photo of present matters in the fields of formal ontology and ontological engineering, in addition to supplying a glimpse of destiny learn directions.
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Extra info for Formal Ontology in Information Systems: Proceedings of the Fifth International Conference (FOIS 2008)
B. , The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration, Nature Biotechnology 25 (2007), 1251–1255. D. , The National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge, OMICS, 10 (2006), 185–198. xhtml. Last accessed June 24, 2008. B. , Relations in Biomedical Ontologies, Genome Biology, 6 (2005), R46. J. J. Cimino and X. Y. Zhu, The Practical Impact of Ontologies on Biomedical Informatics, Yearbook of Medical Informatics, 2006, 124-35.
These filters are of course not perfect. Thus far, however, no other vetting device has been offered that would do a better job. Moreover, some of the proposed alternatives have been shown to be marked by even more severe failings . Filtering based on the judgment of experts brings benefits also to readers, since they need only absorb and collate vetted manuscripts, as opposed to all the manuscripts submitted to the relevant journals and to journal-like respositories. As Bug points out, such filtering promises to be especially useful in the field of biomedical ontology: Until there is a reliable vetting procedure, we cannot expect to re-use and extend existing ontologies effectively or with confidence for the purpose of bringing like data together in novel ways from across the biomedical data diaspora.
D. P. , Gene Ontology annotations: What they mean and where they come from, BMC Bioinformatics, 9 (Suppl. 5) (2008), S2. org/. Last accessed June 24, 2008. Gene Ontology Consortium, The Gene Ontology (GO) project in 2006, Nucleic Acids Research, 34 (Database Issue) (2006), D322-D326. org/ontologies/. Last accessed June 24, 2008. Rassinoux A. , Coupling Ontology Driven Semantic Representation with Multilingual Natural Language Generation for Tuning International Terminologies, Medinfo, 12 (2007), 555–9.